Linky

I have yet to read this article, but it looks interesting. I figured I’d offer something up until I can get to it, what with my lack of posting recently.

Only in the light of evolution

Now that finals are over, I can devote more time to my dear, neglected blog. I begin with a series:

I am following a specific chapter in Jerry Coyne’s Why Evolution is True.

The fossil record: We should see fossils in a certain order if evolution is correct. They should go from simple to more complex overall, and the fossils we see in the most recent strata should resemble extant life much more than the fossils we see in old strata.

We should also see changes within lineages. We should be able to observe instances of gradual change in species that eventually leads up to either current species or at least to the time of extinction for these species.

Here’s a simple timeline of life’s history. Click it.

What the evidence shows is gradual change. First we find simple bacteria which survived off energy from the Sun, then we see more complicated cells known as eukaryotes arise. (You are a eukaryote.) Next we see a slew of multi-cellular animals arise. They’re still simple, but much more complex than the original bacteria. A few million years later more complicated life arrives. Early (and simple) plants begin to take hold. Soon the fossil record begins to show more plant complexity with low-lying shrub such as ferns, then conifers, then deciduous trees, and finally flowering plants. Gradual changes occur in the oceans and fresh waters which lead to fish and then tetrapods (Tiktaalik comes to mind).

One of my favorite fossils is trilobites. They’re extremely common due to their hard bodies. In fact, even their eyes are well-preserved because of their hard mineral make-up. I personally recall entering touristy-stores seeing countless fossils of these guys in the mid-west to the west (which, unsurprisingly, was once a shallow sea). This image shows the different lineages of this organism. Studies show that the ‘rib’ count has changed over time in each individual species, often without regard to how the other species changed. Going back further, there is less and less divergence in each species. Eventually, as evolution predicts, they all meet at a common ancestor.

So naturally the next step is to find fossils which show more significant changes. Let’s take birds and reptiles. They hold similarities between each other, both morphologically (certain shapes and structures) and phylogenetically (genetic sequence). A good hypothesis is that they came from one common ancestor. If this is true, the links between birds and its ancestors and reptiles and its ancestors should lead to the same point. They do. Dinosaurs are the ancestors of both. The links between birds and dinosaurs are so incredibly well established that I’d prefer to not go over them in detail. But for starters, some dinosaurs sported feathers and claws and had the same proteins for the feather-making process as extant birds. The links between reptiles and dinosaurs is easier just on intuition, so I’ll leave it at that for now.

Other transitional fossils include the already mentioned Tiktaalik. A view of the history of life can be see here. This shows the change in head and neck structure. Recent research on long-ago discovered Tiktaalik fossils has shown the importance in the gradual bone changes in the neck. These changes – a hallmark of evolution – were important to the ability to turn its head. This is a hallmark because natural selection only modifies what already exists. This is precisely what happened.

Going further with this example, evolution makes predictions as to how early fish evolved to survive on land. If there were lobe-finned fish 390 million years ago and obviously terrestrial organisms 360 million years ago (which is what the fossil record shows), then if scientists are to find transitional fossils, they should date in between that time frame. There should be an animal that shows both features of lobe-finned fish and terrestrial animals. Tiktaalik is that animal. It has fins, scales, and gills, but it also has a flat, salamander-like head with nostrils on top of its nose. This is a good indication that it could breathe air. Its eyes were also placed there, indicating that it swam in shallow waters. Furthermore, it was lobe-finned, but shows bones (which eventually evolved into the arm bones you used to get out of bed today) that were able to support its weight to prop itself up. And of course, it dates to 375 million years ago.

Next, evolution says the fossil record should show recent fossils being more closely related to extant species than are early fossils. This is precisely what happens. Sixty million years ago there were no whales. Fossils resembling modern whales only show up 30 million years ago. So, again, evolution makes a predication: if transitional fossils are to be found, they will be within this gap. And so it is.

We begin with Indohyus. It was an artiodactyl. This is important because extant whales have vestigial bones which indicate that they came from this order: scientists expected to find this because, again, evolution predicted it. It should be of no surprise that this fossil dates to about 48 million years ago, right in the predicted gap. From here there is a gradual evolution shown in the fossil record which leads up to modern whales.

Maine legalizes gay marriage; society fails

Maine legalized gay marriage today. Oh, the humanity! Buildings are crumbling outside. Fish are coming up dead in the lake out back. People are dying. Animals have rabies. I saw an old guy fall. There’s a pot hole in the road. It’s all over, folks! Grab your canned beans and flashlights and hunker down. It’s May, but winter has come and it ain’t going anywhere.

Nearly six in 10 people ages 18 to 34 said same-sex marriages should be legal. Just over four in 10 people ages 35 to 49 agreed. Numbers were similar for 50- to 64-year olds, but only 24 percent of people 65 and older agreed.

My specific, cultural, particular, Abrahamic god! Once all the old geezers die, no People’s Veto is going to be able to save our non-animal, specially created souls.

This is what you get during finals week

Spiral Galaxy M74

Hubble image of a spiral galaxy, M74.

Glenn Beck is such a huge idiot

I, for whatever inane reason, find myself listening to conservat…sorry, fair and balanced news. From what I gather, the station is a combination of FOX Noise radio and a local conservative station, probably a FOX affiliate. It basically consists of four shows: Hannity, Beck, Carr, and some automotive show for whatever strange reason. Beck has the most charisma, so I find listening to his outrageous opinions to be the most tolerable. UPDATE: It turns out they’re all intolerable. And Carr has more charisma.

I was listening to the jackass last night and he was going on about science – no doubt, Ben Stein’s definition of science. This is what he said (paraphrased).

We all know Earth didn’t just come into existence by magic by some invisible guy in the sky! No! It was when two rocks collided that Earth was created!

The sarcasm dripped.

Surely what Beck was referencing was the well-established fact of the accretion process. Apparently this is just too absurd for the man. From what I can tell, the guy has some smarts about him. He managed to attend Yale shortly before dropping out. Really, that’s the problem. A stupid creationist isn’t as common as one might think; what we’re seeing are ignorant creationists. These people, for whatever reason, refuse to educate themselves. That in itself is stupid, but their lack of knowledge is ignorance. It’s no crime, but these people shouldn’t be getting talk shows and Vice Presidential nominations.

Let's make it simple

The gay marriage issue is not about sexual orientation. I’ve said it again and again. It is about sex. Here is the best explanation why.

  • Straight man + straight woman = marriage
  • Straight man + gay woman = marriage
  • Straight man + gay man = no marriage
  • Straight man + straight man = no marriage
  • Gay man + gay man = no marriage
  • Gay man + gay woman = marriage
  • Straight woman + straight woman = no marriage
  • Straight woman + gay woman = no marriage
  • Gay woman + gay woman = no marriage

In every instance where a man and woman are on one side of the equation, marriage is allowed in every state. In every instance where the same sex is on the same side of the equation, marriage is not allowed in every state. The clear conclusion is that sexual orientation is not at issue in the least – legally speaking. Currently, the government is willfully discriminating on the basis of sex. That is illegal. It needs to stop.

Let’s make it simple

The gay marriage issue is not about sexual orientation. I’ve said it again and again. It is about sex. Here is the best explanation why.

  • Straight man + straight woman = marriage
  • Straight man + gay woman = marriage
  • Straight man + gay man = no marriage
  • Straight man + straight man = no marriage
  • Gay man + gay man = no marriage
  • Gay man + gay woman = marriage
  • Straight woman + straight woman = no marriage
  • Straight woman + gay woman = no marriage
  • Gay woman + gay woman = no marriage

In every instance where a man and woman are on one side of the equation, marriage is allowed in every state. In every instance where the same sex is on the same side of the equation, marriage is not allowed in every state. The clear conclusion is that sexual orientation is not at issue in the least – legally speaking. Currently, the government is willfully discriminating on the basis of sex. That is illegal. It needs to stop.

Drugs

Is this surprising at all?

The question is, does the new policy work? At the time, critics in the poor, socially conservative and largely Catholic nation said decriminalizing drug possession would open the country to “drug tourists” and exacerbate Portugal’s drug problem; the country had some of the highest levels of hard-drug use in Europe. But the recently released results of a report commissioned by the Cato Institute, a libertarian think tank, suggest otherwise.

The paper, published by Cato in April, found that in the five years after personal possession was decriminalized, illegal drug use among teens in Portugal declined and rates of new HIV infections caused by sharing of dirty needles dropped, while the number of people seeking treatment for drug addiction more than doubled.

“Judging by every metric, decriminalization in Portugal has been a resounding success,” says Glenn Greenwald, an attorney, author and fluent Portuguese speaker, who conducted the research. “It has enabled the Portuguese government to manage and control the drug problem far better than virtually every other Western country does.”

This is no surprise. Making criminals out of people who aren’t criminals will cost you money, not manage any actual problems, and, well, create criminals. That is what the U.S. prison system’s goal has become. There is no interest in humans, just procedure.

Compared to the European Union and the U.S., Portugal’s drug use numbers are impressive. Following decriminalization, Portugal had the lowest rate of lifetime marijuana use in people over 15 in the E.U.: 10%. The most comparable figure in America is in people over 12: 39.8%. Proportionally, more Americans have used cocaine than Portuguese have used marijuana.

The Cato paper reports that between 2001 and 2006 in Portugal, rates of lifetime use of any illegal drug among seventh through ninth graders fell from 14.1% to 10.6%; drug use in older teens also declined. Lifetime heroin use among 16-to-18-year-olds fell from 2.5% to 1.8% (although there was a slight increase in marijuana use in that age group). New HIV infections in drug users fell by 17% between 1999 and 2003, and deaths related to heroin and similar drugs were cut by more than half. In addition, the number of people on methadone and buprenorphine treatment for drug addiction rose to 14,877 from 6,040, after decriminalization, and money saved on enforcement allowed for increased funding of drug-free treatment as well.

At every turn, decriminalization works for society as a whole. Things like this are why Europe is lightyears ahead of the U.S.

I’ve never personally tried any drugs beyond the (very) occasional drink or celebratory cigar (which was pointless), so I can’t say I have a direct personal interest in decriminalization, but I certainly have a very slightly less direct interest. Namely, I pay taxes. I’d rather not pay the government to create criminals which help to support mobs, gangs, pimps, and other nefarious individuals and groups.

I want to start a meme

Chad Farnan is an idiot

Anytime someone thinks something truly stupid, he’s such a Chad Farnan. You think Earth began during the agricultural revolution? You’re a Chad Farnan. You think think the government should sanction your crack pottery? You’re a Chad Farnan.

UPDATE: What am I thinking? This should clearly be the meme: You believe Earth is as old as the domestication of the dog? You’re Farnan stupid.

Marriage is between people, not disparate ideas

There are a couple of articles floating around about a new site run by Francis Collins and Karl Giberson

Our Mission: Faith and science both lead us to truth about God and creation. The BioLogos Foundation promotes the search for truth in both the natural and spiritual realms, and seeks to harmonize these different perspectives.

It’s just another accomodationist point of view. These people want to marry science and religion. It’s politically very tactful: people don’t like extremes, so taking a sort of middle-road is very appealing. Beside that, many people know enough to realize that biologists aren’t lying when they say evolution underscores all of biology but they don’t know enough to recognize they should reject their particular cultural god(s).

But here’s the kicker. These people aren’t really middle-of-the-roaders. They are creationists gussied up once again. They aren’t concerned with science at all. What they want to do is twist established fact to fit their preconceived worldview, science be damned. Let’s call these people what they really are: the New Creationists.

Simon Conway Morris presents a different perspective, arguing humans, or a human-like species, are actually an inevitable part of evolution. Morris is not proposing a different mechanism for human evolution, merely a different observation of its possible outcomes. Morris would agree that any slight difference in the history of human DNA would result in a different evolutionary path. Unlike Gould, however, Morris argues each of those possible pathways would inevitably lead to something like the human species. Morris writes:

“The prevailing view of evolution is that life has no direction — no goals, no predictable outcomes. Hedged in by circumstances and coincidence, the course of life lurches from one point to another. It is pure chance that 3 billion years of evolution on Earth have produced a peculiarly clever ape. We may find distant echoes of our aptitude for tool making and language and our relentless curiosity in other animals, but intelligence like ours is very special. Right?”

“Wrong! The history of life on Earth appears impossibly complex and unpredictable, but take a closer look and you’ll find a deep structure. Physics and chemistry dictate that many things simply are not possible, and these constraints extend to biology. The solution to a particular biological problem can often only be handled in one of a few ways, which is why when you examine the tapestry of evolution you see the same patterns emerging over and over again.” 4

The patterns Morris mentions are also referred to as convergences in the evolutionary process. In his most recent book, Life’s Solution, Morris gives many examples of physical traits or abilities found repeatedly among different species.5 Normally, such similarities are understood asthe result of common ancestry. However, the species in Morris’s examples are known to be distantly related. In many cases, not even these species’ common ancestor shared the same trait. The implication is that several different species have independently developed similar traits.

There is just so much wrong here. First of all, this is saying the roads of evolution are limited, thus humans (or something similar to humans) were inevitable. This is only true if one is to start from a certain, late point. An ape, for example, is limited to being a mammal for many thousands, even millions of years. It is bound to the land for a significant period of time. But go far enough down the line and it isn’t possible to count the possibilities of ape evolution. Taking this principle, we can walk back in time. Deep time. Three and a half billion years ago, eukaryotes weren’t inevitable. Hell, four billion years ago and life wasn’t inevitable, much less humans. It’s an absurd argument being peddled that is designed to harm the atheist position while strengthening creationists. This isn’t about marrying science and religion at all; it’s about propping up religion at the expense of actual science.

Second, this is saying that because similar features have evolved again and again and not as a result of common ancestory, this is evidence for limited pathways in evolution. This doesn’t speak to any of that goobbity-goop. What this says is that natural selection has a tendency to take common initial pathways and make similar structures. The eye is a good example. This website, being a creationist site, naturally abuses the example of eye, so I hope I can fix that a bit.

The eye has evolved independently about 40 times. This doesn’t mean that the eye is absolutely inevitable. If it did, then we should see more species with eyes. What we actually see is an entire planet with the same basis for life – DNA. From this DNA, we see cells. In eukaryotes, we see certain similarities with Vitamin-A parts of molecules in all eyed animals. In addition, most animals (regardless of whether or not they have eyes) have photoreceptor cells. All it really takes for an eye to evolve is a small pit, indent, or even surface area for these cells to rest. Having just a tiny bit of vision can give enormous benefits to any animal. Some squid, for example, have eyespots which allow them to detect the wavelengths of light. This helps them ‘know’ (they have no brains, only nervous systems) in which direction to go. Say a certain shade of green is common on the sea floor, which is where the squids food source (let’s say) lives. Being able to decipher between green and other shades is beneficial. Natural selection will favor those with better green detection. Going further, other animals can develop the same basic idea through mutation yet evolve it in completely different ways at completely different times. This isn’t evidence for some things being so improbable that ‘God done it’. It’s evidence for common chemistry and biology being molded by the far-from-improbable mechanism of natural selection.